sageweb-yoda

YODA-1.3.1 This program analyzes growth curves, computing doubling times and relative survivals on a sequence of outgrowth curves. The data is exported in a format for easy plotting in Excel (or other spreadsheet programs). The program can also output average values and standard deviations for a group of curves. It is made publicly available on our server at: http://www.sageweb.org/yoda Installation This program is built on a server/client architecture using the PHP symfony framework (http://www.symfony-project.org/). It requires a web server that is set up with MySQL and PHP support. Installation instructions: 1. unzip yoda onto your server (outside of the web root). 1. move the yoda /web directory into your web root and rename the directoy to "yoda" 1. update the yoda /web/index.php file to include the location of the yoda /config directory 1. create a mysql database and run the SQL in yoda /data/sql/schema.sql 1. ad

apps
frontend
.sf
cache
sfFileCache.class.php
sfEAcceleratorCache.class.php
sfAPCCache.class.php
sfMemcacheCache.class.php
sfCache.class.php
sfSQLiteCache.class.php
sfXCacheCache.class.php
sfNoCache.class.php
sfFunctionCache.class.php
sfCacheClearTask.class.php
.sf
config
doctrine
routing.yml
factories.yml
frontendConfiguration.class.php
app.yml
security.yml
filters.yml
cache.yml
view.yml
settings.yml
ProjectConfiguration.class.php
rsync_exclude.txt
properties.ini
databases.yml
sfConfigHandler.class.php
sfDatabaseConfigHandler.class.php
sfViewConfigHandler.class.php
sfGeneratorConfigHandler.class.php
sfProjectConfiguration.class.php
sfDefineEnvironmentConfigHandler.class.php
sfAutoloadConfigHandler.class.php
sfFilterConfigHandler.class.php
sfPluginConfigurationGeneric.class.php
sfYamlConfigHandler.class.php
sfSecurityConfigHandler.class.php
sfRootConfigHandler.class.php
sfCacheConfigHandler.class.php
sfConfig.class.php
sfFactoryConfigHandler.class.php
sfPluginConfiguration.class.php
sfCompileConfigHandler.class.php
sfRoutingConfigHandler.class.php
sfSimpleYamlConfigHandler.class.php
sfApplicationConfiguration.class.php
sfConfigCache.class.php
core_compile.yml
settings.yml
config_handlers.yml
autoload.yml
security.yml
filters.yml
module.yml
view.yml
factories.yml
autoload.yml
installer.php
sfDoctrinePluginConfiguration.class.php
autoload.yml
installer.php
sfPropelPluginConfiguration.class.php
ProjectConfiguration.class.php
properties.ini
rsync_exclude.txt
databases.yml
schema.yml
databases.yml
propel.ini
routing.yml
ApplicationConfiguration.class.php
settings.yml
security.yml
filters.yml
app.yml
view.yml
cache.yml
factories.yml
ProjectConfiguration.class.php
schema.yml
properties.ini
rsync_exclude.txt
databases.yml
ProjectConfiguration.class.php
properties.ini
schema.xml
rsync_exclude.txt
databases.yml
propel.ini
generator.yml
generator.yml
routing.yml
backendConfiguration.class.php
settings.yml
security.yml
filters.yml
app.yml
view.yml
cache.yml
factories.yml
routing.yml
settings.yml
security.yml
frontendConfiguration.class.php
filters.yml
app.yml
view.yml
cache.yml
factories.yml
generator.yml
generator.yml
routing.yml
settings.yml
security.yml
filters.yml
backend_compatConfiguration.class.php
app.yml
view.yml
cache.yml
factories.yml
crudConfiguration.class.php
routing.yml
settings.yml
security.yml
filters.yml
app.yml
view.yml
cache.yml
factories.yml
routing.yml
settings.yml
security.yml
frontendConfiguration.class.php
filters.yml
app.yml
view.yml
cache.yml
factories.yml
generator.yml
generator.yml
generator.yml
generator.yml
generator.yml
generator.yml
data
sql
fixtures
in.dat
zh_TW.dat
es_PE.dat
ar_SA.dat
hu.dat
sw.dat
az_AZ.dat
de_LU.dat
en_GB.dat
th_TH_TRADITIONAL.dat
es_VE.dat
ms_MY.dat
fi.dat
kn.dat
sh_YU.dat
gsw.dat
uz_UZ.dat
sl.dat
gsw_CH.dat
zh_CN.dat
ar_JO.dat
ml_IN.dat
id.dat
pl_PL.dat
es_SV.dat
sv_SE.dat
es_UY.dat
fr_LU.dat
bn_IN.dat
de_AT.dat
ne.dat
en_NZ.dat
uz_Cyrl.dat
sv_FI.dat
nb.dat
ii.dat
en.dat
ti.dat
pa_Arab.dat
zu_ZA.dat
fi_FI.dat
fr_CH.dat
ro_RO.dat
hy_AM_REVISED.dat
sr_BA.dat
el_GR.dat
mt.dat
zh_Hans_CN.dat
sr_Latn.dat
ca.dat
es_EC.dat
cs_CZ.dat
as_IN.dat
es_HN.dat
sr_Cyrl_YU.dat
id_ID.dat
en_CA.dat
no_NO.dat
ii_CN.dat
om_KE.dat
ga.dat
ar.dat
lt.dat
ar_LY.dat
en_SG.dat
zh_Hans_HK.dat
hy_AM.dat
as.dat
zh.dat
hr.dat
uz_AF.dat
ja_JP.dat
en_MH.dat
root.dat
sh_CS.dat
ar_TN.dat
ro.dat
ml.dat
lv.dat
es_ES.dat
pt.dat
gl_ES.dat
el.dat
en_VI.dat
pt_PT.dat
da.dat
ar_BH.dat
el_CY.dat
es_PR.dat
sr_Cyrl.dat
en_PH.dat
es_AR.dat
mk.dat
en_AU.dat
tr.dat
te_IN.dat
ar_OM.dat
iw.dat
sr_Latn_YU.dat
sr_Latn_BA.dat
fr.dat
bg_BG.dat
en_ZA.dat
kok.dat
eu.dat
so_DJ.dat
de.dat
gv.dat
nl.dat
pl.dat
ne_NP.dat
es_US.dat
uk.dat
nb_NO.dat
es_NI.dat
cy.dat
te.dat
zh_Hans_SG.dat
cy_GB.dat
pt_BR.dat
kk_KZ.dat
sr.dat
uz.dat
zh_SG.dat
he2.dat
ta_IN.dat
sr_RS.dat
ha_Latn_NE.dat
so_ET.dat
fo_FO.dat
en_US.dat
bo_IN.dat
en_IE.dat
es.dat
ha_Latn.dat
de_LI.dat
ro_MD.dat
mk_MK.dat
or.dat
ha_NE.dat
kk_Cyrl.dat
ru_RU.dat
am.dat
es_MX.dat
kn_IN.dat
et.dat
nn.dat
fr_CA.dat
haw.dat
sr_ME.dat
tr_TR.dat
ta.dat
ar_IQ.dat
be.dat
hi.dat
zh_Hans_MO.dat
kw.dat
iw_IL.dat
so_SO.dat
fr_BE.dat
it_IT.dat
hu_HU.dat
mr_IN.dat
af.dat
es_DO.dat
zu.dat
fa_IR.dat
sr_Latn_RS.dat
zh_MO.dat
eu_ES.dat
om.dat
sr_Latn_CS.dat
he.dat
vi.dat
ar_SD.dat
it_CH.dat
ar_LB.dat
zh_Hant.dat
de_CH.dat
de_BE.dat
fr_SN.dat
ms.dat
si.dat
pa_Arab_PK.dat
bn.dat
es_CO.dat
th.dat
ha.dat
sh.dat
bn_BD.dat
uz_Latn.dat
uk_UA.dat
kk.dat
eo.dat
pa.dat
es_CL.dat
mr.dat
ar_AE.dat
sq_AL.dat
en_BZ.dat
az_Latn_AZ.dat
en_RH.dat
kl.dat
ha_NG.dat
sr_Cyrl_BA.dat
ps_AF.dat
or_IN.dat
ko_KR.dat
ur_PK.dat
kk_Cyrl_KZ.dat
ti_ET.dat
en_PK.dat
he_IL.dat
zh_HK.dat
in_ID.dat
nn_NO.dat
am_ET.dat
ka_GE.dat
ti_ER.dat
en_JM.dat
sk_SK.dat
ga_IE.dat
si_LK.dat
ko.dat
ps.dat
sr_Cyrl_CS.dat
ar_QA.dat
fr_FR.dat
ar_MA.dat
es_BO.dat
ar_SY.dat
ne_IN.dat
lt_LT.dat
sr_Cyrl_RS.dat
ar_YE.dat
en_TT.dat
uz_Cyrl_UZ.dat
sr_Cyrl_ME.dat
ru_UA.dat
de_DE.dat
gl.dat
af_ZA.dat
es_CR.dat
az_Latn.dat
ms_BN.dat
om_ET.dat
ja.dat
az_Cyrl.dat
mt_MT.dat
en_BW.dat
en_HK.dat
sq.dat
en_NA.dat
so.dat
gv_GB.dat
km.dat
et_EE.dat
uz_Arab_AF.dat
en_IN.dat
bg.dat
cs.dat
haw_US.dat
en_MT.dat
no.dat
en_ZW.dat
so_KE.dat
es_GT.dat
es_PY.dat
gu.dat
kw_GB.dat
ur.dat
fa_AF.dat
pa_PK.dat
sl_SI.dat
zh_Hant_HK.dat
sr_YU.dat
is.dat
pa_Guru_IN.dat
ar_EG.dat
uz_Latn_UZ.dat
vi_VN.dat
sr_CS.dat
kok_IN.dat
ca_ES.dat
sw_KE.dat
sw_TZ.dat
zh_Hant_TW.dat
az.dat
sk.dat
th_TH.dat
hy.dat
sh_BA.dat
fo.dat
ha_Latn_GH.dat
da_DK.dat
ar_DZ.dat
pa_IN.dat
az_Cyrl_AZ.dat
fr_MC.dat
fa.dat
en_BE.dat
hr_HR.dat
no_NO_NY.dat
ja_JP_TRADITIONAL.dat
lv_LV.dat
sr_Latn_ME.dat
ha_Latn_NG.dat
km_KH.dat
sv.dat
en_US_POSIX.dat
be_BY.dat
zh_Hans.dat
af_NA.dat
pa_Guru.dat
ka.dat
hi_IN.dat
bo_CN.dat
uz_Arab.dat
kl_GL.dat
bo.dat
ar_KW.dat
gu_IN.dat
is_IS.dat
es_PA.dat
it.dat
nl_NL.dat
ha_GH.dat
zh_Hant_MO.dat
ur_IN.dat
nl_BE.dat
ru.dat
error.rdf.php
exception.txt.php
exception.css.php
error.atom.php
error.css.php
exception.html.php
error.xml.php
exception.json.php
exception.xml.php
error.txt.php
exception.js.php
error.json.php
exception.atom.php
error.js.php
error.html.php
exception.rdf.php
unavailable.php
.sf
environment.migrated
docs
help
design
descriptor_format.xls
yoda-1.3.graphml
lib
vendor
myUser.class.php
LoginValidator.php
LoginForm.php
ExportForm.class.php
EditForm.class.php
UploadForm.php
MessageHolder.class.php
TTest.class.php
Exporter.class.php
GroupNumber.class.php
LineageGroup.class.php
Info.class.php
Well.class.php
Run.class.php
WellGroup.class.php
Experiment.class.php
Lineage.class.php
Stats.class.php
log
sfWebDebugLogger.class.php
sfFileLogger.class.php
sfConsoleLogger.class.php
sfStreamLogger.class.php
sfLoggerInterface.class.php
sfLoggerWrapper.class.php
sfNoLogger.class.php
sfVarLogger.class.php
sfLogger.class.php
sfAggregateLogger.class.php
sfLogRotateTask.class.php
sfLogClearTask.class.php
sfPropelLogger.class.php
.sf
plugins
.sf
scripts
migrate-1.2-to-1.3.php
test
bootstrap
functional
unit
sfTestFunctional.class.php
sfTestBrowser.class.php
sfTestFunctionalBase.class.php
sfTesterRequest.class.php
sfTesterUser.class.php
sfTesterMailer.class.php
sfTesterForm.class.php
sfTester.class.php
sfTesterViewCache.class.php
sfTesterResponse.class.php
sfTestBaseTask.class.php
sfTestFunctionalTask.class.php
sfLimeHarness.class.php
sfTestUnitTask.class.php
sfTestAllTask.class.php
sfTestCoverageTask.class.php
sfTesterDoctrine.class.php
sfTesterPropel.class.php
.sf
actionsTest.php
web
files
css
js
images
.htaccess
robots.txt
index.php
index.php
robots.txt
.htaccess
favicon.png
frontend_dev.php
LICENSE.txt
README.txt
symfony