unix，linux下编译。对于蛋白质，序列比对，以支持吨。

unix,linux下编译。用于蛋白质，DNA序列比对，支持双序列或多序列比对。 -unix, linux under the compiler. For protein, DNA sequence alignment to support the dual-sequence or multiple sequence alignment right.

muscle3.7_src
aligngivenpathsw.cpp
aligntwomsas.cpp
aligntwoprofs.cpp
aln.cpp
alpha.cpp
alpha.h
anchors.cpp
bittraceback.cpp
blosum62.cpp
blosumla.cpp
clust.cpp
clust.h
cluster.cpp
cluster.h
clustset.h
clustsetdf.h
clustsetmsa.h
clwwt.cpp
color.cpp
cons.cpp
diaglist.cpp
diaglist.h
diffobjscore.cpp
diffpaths.cpp
difftrees.cpp
difftreese.cpp
distcalc.cpp
distcalc.h
distfunc.cpp
distfunc.h
distpwkimura.cpp
domuscle.cpp
dosp.cpp
dpregionlist.h
dpreglist.cpp
dpreglist.h
drawtree.cpp
edgelist.cpp
edgelist.h
enumopts.cpp
enumopts.h
enums.h
enumtostr.cpp
estring.cpp
estring.h
fasta.cpp
fasta2.cpp
fastclust.cpp
fastdist.cpp
fastdistjones.cpp
fastdistkbit.cpp
fastdistkmer.cpp
fastdistmafft.cpp
fastdistnuc.cpp
fastscorepath2.cpp
finddiags.cpp
finddiagsn.cpp
gapscoredimer.h
glbalign.cpp
glbalign352.cpp
glbaligndiag.cpp
glbalignle.cpp
glbalignsimple.cpp
glbalignsp.cpp
glbalignspn.cpp
glbalignss.cpp
glbalndimer.cpp
globals.cpp
globalslinux.cpp
globalsother.cpp
globalswin32.cpp
gonnet.cpp
gonnet.h
gotowt.cpp
henikoffweight.cpp
henikoffweightpb.cpp
html.cpp
hydro.cpp
intmath.cpp
intmath.h
local.cpp
main.cpp
Makefile
makerootmsa.cpp
makerootmsab.cpp
maketree.cpp
mhack.cpp
mpam200.cpp
msa.cpp
msa.h
msa2.cpp
msadist.h
msadistkimura.cpp
msf.cpp
muscle.cpp
muscle.h
muscleout.cpp
nucmx.cpp
nwdasimple.cpp
nwdasimple2.cpp
nwdasmall.cpp
nwrec.cpp
nwsmall.cpp
objscore.cpp
objscore.h
objscore2.cpp
objscoreda.cpp
onexception.cpp
options.cpp
outweights.cpp
pam200mafft.cpp
params.cpp
params.h
phy.cpp
phy2.cpp
phy3.cpp
phy4.cpp
phyfromclust.cpp
phyfromfile.cpp
physeq.cpp
phytofile.cpp
posgap.cpp
ppscore.cpp
profdb.cpp
profile.cpp
profile.h
profilefrommsa.cpp
progalign.cpp
progress.cpp
progressivealign.cpp
pwpath.cpp
pwpath.h
readmx.cpp
realigndiffs.cpp
realigndiffse.cpp
refine.cpp
refinehoriz.cpp
refinesubfams.cpp
refinetree.cpp
refinetreee.cpp
refinevert.cpp
refinew.cpp
savebest.cpp
scoredist.cpp
scoregaps.cpp
scorehistory.cpp
scorehistory.h
scorepp.cpp
seq.cpp
seq.h
seqvect.cpp
seqvect.h
setblosumweights.cpp
setgscweights.cpp
setnewhandler.cpp
spfast.cpp
sptest.cpp
stabilize.cpp
subfam.cpp
subfams.cpp
sw.cpp
termgaps.cpp
textfile.cpp
textfile.h
threewaywt.cpp
timing.h
tomhydro.cpp
traceback.cpp
tracebackopt.cpp
tracebacksw.cpp
tree.h
treefrommsa.cpp
types.h
typetostr.cpp
unixio.h
upgma2.cpp
usage.cpp
validateids.cpp
vtml2.cpp
writescorefile.cpp
aligngivenpath.cpp
muscle3.7_src