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AMS 4.0: consensus prediction of post-translational modifications in protein sequences
Dariusz Plewczynski
Interdisciplinary Centre for Mathematical and Computational Modeling, University of Warsaw, 02-106 Warsaw, Poland, Email: darman AT icm.edu.pl
Subhadip Basu
Department of Computer Science and Engineering, Jadavpur University, Kolkata – 700032, India, Email: subhadip AT cse.jdvu.ac.in
Indrajit Saha
Interdisciplinary Centre for Mathematical and Computational Modeling, University of Warsaw, 02-106 Warsaw, Poland, Email: darman AT icm.edu.pl
Abstract
We present here the 2011 update of the AutoMotif Service (AMS 4.0) that predicts the wide selection of 88 different types of the single amino acid post-translational modifications (PTM) in protein sequences. The selection of experimentally confirmed modifications is acquired from the latest UniProt and Phospho.ELM databases for training. The sequence vi
