资 源 简 介
Update Jan 2010
For latest versions, please visit the webpage at BCM HGSC:
http://www.hgsc.bcm.tmc.edu/cascade-tech-softwareatlassnp-ti.hgsc
Atlas-SNP is a tool for SNP discovery from genome resequencing using next-generation sequencing technologies.
References
Shen Y, Wan Z, Coarfa C, Drabek R, Chen L, Ostrowski EA, Liu Y, Weinstock GM, Wheeler DA, Gibbs RA, Yu F., A SNP discovery method to assess variant allele probability from next-generation resequencing data. Genome Res. 2009 Dec 17. (Epub ahead of print) Abstract
Wheeler DA, Srinivasan M, Egholm M, Shen Y, Chen L, McGuire A, He W, Chen YJ, Makhijani V, Roth GT, Gomes X, Tartaro K, Niazi F, Turcotte CL, Irzyk GP, Lupski JR, Chinault C, Song XZ, Liu Y, Yuan Y, Nazareth L, Qin X, Muzny DM, Margulies M, Weinstock GM, Gibbs RA, and Rothberg JM, The complete genome of an in
文 件 列 表
atlas-snp
internal
util
atlas-indel.rb
README.txt
pick_best_hits_from_BLAT_psl.rb
README_human_genotype.txt
atlas-detect-duplicates.rb
atlas-snp.rb
atlas-detect-duplicates-prepare-blat.rb
atlas-mapper-coverage.rb
atlas-mapper-format-ref.rb
atlas-mapper.rb
atlas-snp-annotate-gff.rb
atlas-snp-annotate.rb
atlas-snp-evaluate.rb
atlas-snp-evaluate-hapmapspecific.rb
atlas-snp-genotype.rb
genotype-determination.rb
get-query-seq-by-name.rb
split-fasta-to-batches.rb
homo-genotype-recover.rb
nqs-determination.rb
nqs-pass-distribution.rb
