资 源 简 介
TRIMQ is a perl script that trims bases with low quality and minimum sequence length. An input file should be in Sanger Fastq format.
USE:
* perl trimq_v_0.1.1.pl [--help] [--man]
[--qcutoff] [--lcutoff]
--in input_file.fastq [--out input\_file\_trimmed.fastq]
Examples:
* perl trimq_v_0.1.1.pl --help
* perl trimq_v_0.1.1.pl --man
* perl trimq_v_0.1.1.pl --in input_file.fastq (Output file name will be input_file_trimmed.fastq)
* perl trimq_v_0.1.1.pl --in input_file.fastq.gz (Output file name will be input_file_trimmed.fastq.gz)
* perl trimq_v_0.1.1.pl --in input_file.fastq --out input_file_trimmed.fastq
* perl trimq_v_0.1.1.pl --in input_file.fastq.gz --out input_file_trimmed.fastq.gz
* perl trimq_v_0.1.1.pl --qcutoff 35 --lcutoff 25 --in input_file.fastq --out input_file_trimmed.fastq
Options:
* -h or --help print help message
* -q or --qcutoff qu
