search-tree

Contains the entire source code of the search engine behind the phylogenetic tree database hosted at http://searchtree.org/. The complete pre-computed data set of phylogenetic trees will be around 300GB (1 billion trees). SearchTree achieves fast response times through a combination of techniques from information retrieval, notably inverted indexing, and from computational phylogenetics, especially for constructing consensus trees.

GeneTreeDuplicity
GTD_common.h
GTD_main.cpp
GTD_MemBuf.cpp
GTD_MemBuf.h
GTD_StandAlone.cpp
GTD_Test.cpp
GTD_Test.h
GTD_TreeEntities.cpp
GTD_TreeEntities.h
GTD_TreeProcessor.cpp
GTD_TreeProcessor.h
GTD_util.cpp
GTD_util.h
makefile
vssver.scc
Test1
ClusterEntities.cpp
ClusterEntities.h
Common.h
files
GenerateCluster.cpp
GenerateMRT.cpp
GenerateSubtrees.cpp
log
makefile
MRT.h
ProcessGeneratedClusters.cpp
ProcessQuery.cpp
QueryEntities.h
T1_main.cpp
T1_test.cpp
T1_test.h
vssver.scc
TreeIndexing
client_socket.cpp
client_socket.h
common.h
DB_FileDetails.txt
files
InitlializeIndex_part1.cpp
InitlializeIndex_part2.cpp
LoadMaps.cpp
log
makefile
ProcessInput.cpp
server_socket.cpp
server_socket.h
StringHash.cpp
StringHash.h
Test_TI.cpp
Test_TI.h
TreeIndexing.cpp
TreeIndexingUtilities.cpp
TreeIndexingUtilities.h
vssver.scc