rseqflow

RseqFlow RseqFlow is an RNA-Seq analysis pipeline which offers an express implementation of analysis steps for RNA sequencing datasets. It can perform pre and post mapping quality control (QC) for sequencing data, calculate expression levels for uniquely mapped reads, identify differentially expressed genes, and convert file formats for ease of visualization. A detailed description of the pipeline is given here. Usage RseqFlow offers two run mode options. One is a VM workflow managed with Pegasus, the other is a simple unix shell run mode that allows users to execute each branch of analysis with a unix command. See unix mode manual and P

rseqflow2
OtherTools
QC_SNP
DE
ExpressionEstimation
FileFormatConversion
pythonCompilerSet.sh
make.sh
import_DESeq_brainwaver.r
README