资 源 简 介
An open source tool for aligning two proteins, using secondary structure output predicted by PSIPRED. Developed in Haskell, using wxHaskell for GUI.
Produces a visual global or local alignment of two proteins, using the following novel techniques:
Uses confidence intervals returned by PSIPRED to determine match scores
Affine gap penalty - alignments prefer long, continuous gaps over many short gaps
Includes original amino acid sequence for reference
Output in HTML format to aid in visualization, or as plain text
