资 源 简 介
Content
[Date:2014-9-1] Both PyroHMMsnp and PyroHMMvar will be integrated into the toolkit PyroTools and moved to GitHub.
Introduction
PyroHMMsnp is a Bayesian SNP calling method for 454 and Ion Torrent sequencing data. PyroHMMsnp employs a hidden markov model(HMM) to perform the realignment on the raw mapping results generated by the mapping program, i.e. MegaBlast, SSAHA2, BWA-SW, Mosaik
文 件 列 表
pyrohmm_no_mismatch_release
tool
moore_train.fa
alignment.h
arg_parser.h
cholesky.h
test.fa
data.h
dp_aligner.h
fasta.h
alignment.cpp
hmm_aligner.h
homopolymer.h
log.h
matrix.h
nr3.h
nucleotide.h
quasinewton.h
ran.h
roots_multidim.h
arg_parser.cpp
dp_aligner.cpp
fasta.cpp
hmm_aligner.cpp
makefile
homopolymer.cpp
log.cpp
main.cpp
matrix.cpp
quickdist.cpp
moore_train.idx
hmmodel_iontorrent
test.id.1k
