go-elite

Software Description GO-Elite (http://genmapp.org/go_elite) is a software tool designed to identify a minimal non-redundant set of biological Ontology (GO) terms or pathways to describe a particular set of genes or metabolites. Default resources include multiple ontologies (Gene, Disease, Phenotype), pathways (WikiPathways, KEGG, Pathway Commons), putative regulatory targets (transcription, microRNA, domains) and cellular biomarkers. This tool calculates over-representation statistics similar to the program MAPPFinder and subsequently produces filtered Ontology and pathway results along with corresponding gene annotations and summarized expression data. Multiple options for pathway visualization are also available. This software can be run using an [intuitive graphical user interface](Tutorial_GUI_version.md), through [command-line arguments](CommandLineMode.md), using a [web interface](GOEliteWebservice.

GO-Elite_v.1.2.6_dev-Py
clustering.py
Config
Documentation
download.py
EnsemblSQL.py
export.py
fishers_exact_test.py
GeneSetDownloader.py
gene_associations.py
gene_associations_temp.py
goelite.py
GO_Elite.py
mappfinder.py
MetabolomicsParser.py
OBO
OBO_import.py
PmwFreeze.py
setup.py
setup_mac.py
statistics.py
UI.py
unique.py
update.py
WikiPathways_webservice.py