psgraph

A scalable parallel software for large-scale protein/DNA sequence graph construction. Download SVN checkcout: $ svn checkout http://psgraph.googlecode.com/svn/trunk/ psgraph-read-only Download: http://code.google.com/p/psgraph/downloads/list Reference _pGraph_ Nonblocking version C. Wu, A. Kalyanaraman, W. Cannon. pGraph: Efficient parallel construction of large-scale protein sequence homology graphs. IEEE Transactions on Parallel and Distributed Systems (TPDS), doi: http://doi.ieeecomputersociety.org/10.1109/TPDS.2012.19. Abstract—Detecting sequence homology between protein sequences is a fundamental problem in computational molecular biology, with a pervasive application in nearly all analyses that aim to structurally and functionally characterize protein molecules. While detecting the homolo

psgraph
.svn
src