fitmodel

Downloads: https://github.com/stephaneguindon/fitmodel Fitmodel is a software that implements multiple models of molecular sequence evolution in a phylogenetic framework. In particular, it can fit models of substitution between codons, including stochastic branch-site models, to alignments of coding sequences. These models are especially useful for detecting traces of positive (Darwinian) selection during the course of evolution. They can also extract relevant information about the patterns of heterogeneity of selection regimes along sequences and lineages.  Citations: "Performance of standard and stochastic branch-site models for detecting positive selection amongst coding sequences" A. Lu and S. Guindon. Molecular Biology and Evolution. 31 (2), 484-495. "Modeling the site-specif

fitmodel-20131125
config.h.in
example
lk.c
config.guess
configure.ac
utilities.c
README
eigenmb.c
configure
draw.c
free.h
missing
models.h
utilities.h
eigen.h
Makefile.am
optimiz.c
options.c
eigen.c
config.sub
optimiz.h
eigenmb.h
lk.h
install-sh
aclocal.m4
free.c
depcomp
Makefile.in
options.h
main.c
draw.h
models.c