资 源 简 介
This project implements four algorithms that maps short reads to one reference sequence or a set of reference sequences.
The primary objective is to measure the performance of the algorithms. However, the code and result can be easily adopted and used in other projects.
文 件 列 表
20090212
bio_misc.cpp
bio_file.cpp
example_out.map
fasta_file.cpp
fasta_file.h
fastq_file.cpp
fastq_file.h
gen_kgrams.cpp
gen_kgrams.h
sarray.h
itermap.cpp
itermap.h
itermap_test_ou.mapt
itermap_test_out.map
itermap_test_seq.fasta
itermap_test_seq.lcp
itermap_test_seq.sa
itermap_test_seq.seq
itermap_test_tag2.fasta
itermap_test_tag.fasta
makefile
map_by_anchor.cxx
map_by_anchor_unique_candidate.cxx
map_by_hybrid.cxx
map_by_substitution.cxx
massrun.pl
misc.cxx
sa_files_small.cpp
sa_files_small.h
bio_file.h
build_files.cpp
build_files_only.cpp
build_files_test_02.fasta
build_files_test.fasta
debug_func.cpp
divsufsort.c
divsufsort.h
divsufsort_private.h
substringsort.c
test_out.beg
test_out.lcp
test_out_only.lcp
test_out_only.sa
test_out_only.seq
test_out.sa
test_out.seq
trsort.c
u_k_gram.txt
