资 源 简 介
These python scripts were used for ISPTM (iterative search for post-translational modification) approach and site confidence score calculation.
For more details, please refer Huang et al, "ISPTM: an Iterative Search Algorithm for Systematic Identification of Post-translational Modifications from Complex Proteome Mixtures", Journal of Proteome Research (2013), 12:3831−42.
Scripts were developed by Xin Huang and Lin Huang, Department of Pathology and Microbiology, University of Nebraska Medical Center
Advisor: Dr. Shi-Jian Ding, Assistant Professor, Department of Pathology and Microbiology, University of Nebraska Medical Center
For questions or comments, please contact Xin (xinhuang.zju@gmail.com) or Shi-Jian (dingshijian@gmail.com)
文 件 列 表
ISPTM
csv_file_merger.py
csv_file_splitter.py
makeblastdb.cmd
mods.xml
parameters.txt
pbs_cluster_version
readme.doc
read_parameters.py
remove_fixed_in_mgf.py
sc1_ms_product_submitter.py
sc2_score_calculator.py
sc3_score_filter.py
step1_ms_spectra_refining.py
step2_basic_search_wo_mods.py
step3a_remove_unmodified_spectra.py
step3b_iterative_searches.py
step4_data_filtering_output.py
