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Bioseqlib
Victor E. Bazterra
Center for High Performance Computing
University of Utah (2005)
Description
Bioseqlib is small library in C++ for bioinformatics applications developted at Center for High Performance Computing University of Utah. Originally, it was built as a part of a bigger project providing basics algorithms like memory management, sequence manipulation and dynamic programming. Since then, the library has grown little more including binary tree operations and some algorithms for calculating phylogenetic trees. I/O functions are done by seqio library, a C library designed to read biological sequences from different databases. A series of wrapper functions are used to access seqio capabilities from bioseqlib.
The structure of this library will allow to be a natural container for more complex implementations. It is organized to improve code portability and re-usability. Another feature is
