资 源 简 介
Stoichiometric models of genome-scale organisms are essential in performing steady-state analysis of cellular systems.
The code here, termed MC3 or MC^3, Model and Constraint Consistency Checker, is a MATLAB based efficient computational tool which can be used for two purposes:
(a) Identifying model errors and potential issues for a given stoichiometric matrix
(b) Flagging model and constraint issues that arise during constraint-based optimization.
The MC3 tool consists of two distinct checking components, one based on Kernel computation and one based on flux balance analysis.
Use MC3 to validate your model before you place it the public domain and when you download a model to uncover all issues with the model.
This work was supported by the National Science Foundation under Grant no. 0829899.
文 件 列 表
mc_calculateDeadEndMetabolites.m
mc_checkmodel.m
mc_findInconsistentCoupling.m
mc_findZeroFluxReactionsKernel.m
mc_unsatisfiedReversibilityFVA.m
mc_unsatisfiedReversibilityKernel.m
mc_zeroFluxReactionFVA.m
util_calculateKernelMatrix.m
util_fba.m
util_minMaxAnalysis.m
util_readBoundsFromSpreadsheet.m
util_readExchangeFromSpreadsheet.m
util_readModelFromSBML.m
util_readModelFromSpreadsheet.m
util_readStoichiometricMatrixFromSpreadsheet.m
util_splitReversibleReactions.m
