dirart

DIRART is a MATLAB toolbox, as well as a stand-alone MATLAB application, for deformable image registration (DIR) and adaptive radiotherapy (ART) research. It contains well implemented DIR algorithms and the essential functions for ART applications. Please see my Medical Physics paper "Technical Note: DIRART – A software suite for deformable image registration and adaptive radiotherapy research" for short instruction and see the user instruction manual in the document section below. The name DIRART stands for DIR+ART. You need MATLAB to run DIRART. You need CERR (http://code.google.com/p/cerr/) as well. Screenshots More screenshots: screenshot 2 请点击左侧文件开始预览 ！预览只提供20%的代码片段，完整代码需下载后查看 加载中 侵权举报

dirart_programs
AboutDIRART.m
Accuracy_Analysis_Callback.m
Add1Dose.m
AddDoseToPlanC.m
AddNewStructures.m
AddNewStructureToPlanC.m
Add_Subtract_Constant_Value_Callback.m
affine_fit_3d.m
affine_fit_w_mask.m
After_Loading_Project_Set_GUI.m
After_Loading_Saved_Project.m
After_Loading_Two_Images.m
Align_Image.m
Align_Images_After_Loading.m
Align_Image_Mouse.m
Anisotropic_Expansion.m
Apply_Structure_Masks_2_Callback.m
ART_Add_Structure_2_PlanC.m
ART_Contour_Deformation_Callback.m
ART_Contour_Deformation_New.m
ART_Load_Structure_CERR.m
autocrop.m
autocrop3d.m
auto_thresholding.m
bitOpn.m
ChangeAlignment.m
Change_NaN_Voxels_Callback.m
CheckAbortPauseButtons.m
CheckKeyModifiers.m
CheckSettingParameters.m
CheckVectorAgainstLimits.m
Check_Image_Dimensions.m
Check_MenuItem.m
CLAHE_Callback.m
Clear_Results.m
ColorRemap.m
Compare_Two_Structures.m
compose_forward_motion_field.m
compose_motion_field.m
ComputeAxesLimitToPositionRatio.m
ComputeCombinedImageInfo.m
ComputeITVF.m
ComputeStructureCenterPos.m
ComputeTVF.m
ComputeVertexNormals.m
compute_density_preservation_modulation_factor.m
compute_jacobian.m
Compute_Moved_Land_Marks_Callback.m
compute_neighborhoold_sigma.m
Compute_TVF_new.m
ConditionalRefreshDisplay.m
configure_sliders.m
ConnectContourSegments.m
contour_deformation_UI.fig
contour_deformation_UI.m
contrast_pointer.mat
ConvertDisplayLimitModes.m
ConvertSliderValues.m
Convert_Intensity_2_Structure.m
Convert_Old_Project.m
CopyDataStructures.m
CopyFields.m
CopyStructure2OtherImage.m
CreateEmptyImage.m
CropImage3Dgui.m
Crop_Image_3D.m
Crop_Image_Callback.m
Crop_Larger_Image_Callback.m
Define_3D_ROI.m
deform_1_contour.m
deform_1_contour_new.m
Deform_1_Dose.m
Deform_1_Dose_New.m
Deform_1_Structure_By_Mask.m
deform_1_structure_mask.m
deform_all_contours.m
deform_contour_points.m
Deform_Fixed_Image.m
deform_image.m
Deform_Moving_Image.m
deform_structure_masks.m
Delete_Couch_Table_Callback.m
demon_global_methods.m
DICOMJ_Import.m
dirart.m
DisplayDose.m
display_flat_image.m
DoseDeformationUI.fig
DoseDeformationUI.m
DoseDisplayOptionsUI.fig
DoseDisplayOptionsUI.m
DoseManager.fig
DoseManager.m
DoseMenuCallback.m
Dose_Deformation.m
DrawARTStructures.m
DrawBoundaryBoxes.m
DrawCheckerboardGridLines.m
DrawContours.m
DrawDVF.m
DrawImageInfo.m
DrawLandmarks.m
DrawNaNBoundary.m
DrawPOI.m
Draw_ROI_Box.m
EnableSliderControls.m
ExpandContractStructure.m
expand_motion_field.m
Expand_Structure_Masks_Callback.m
Extended_Images_in_SI_Callback.m
Extend_Image_2_SI_Callback.m
fast3dconv.m
fast_demon_global_methods.m
fast_free_form_method.m
FillDVFInfo.m
FindCurrentAxes.m
FindMatchingImageUID.m
FindNearestSlice.m
FirstHelp.m
format_patient_str.m
GenerateDoseDescriptionList.m
GenerateDoseMenu.m
GenerateMultigridImageInfo.m
get1pts.m
GetAssociatedImageIdx.m
GetCheckerboardGridSize.m
GetColormapByName.m
GetCombinedImageCoordinateVectors.m
GetCoordinateOffsets.m
GetCropBoundaries.m
GetCurrentSliceCoordinate.m
GetDICOMXYZVals.m
GetDimensionIdxes.m
GetElement.m
GetImageCoordinateVectors.m
GetImageDisplayDimensionAndOffsets.m
GetIndexFromCoordinate.m
GetLimitsFromVector.m
GetLungBoundryOneSlice.m
getMATLABversion.m
GetMotionDisplayModeSelection.m
GetMotionDisplaySelection.m
GetOffsetInCoordinates.m
GetPatientInfoFromPlanC.m
GetSliderValues.m
GetStructElement.m
GetVectorInRange.m
get_display_geometry_limits.m
Get_Image_Slice.m
Get_Image_Slice_By_Coordinate.m
get_image_XYZ_vectors.m
get_transM.m
GPReduce2.m
GPReduceAll.m
GPReduce_Callback.m
gradient_2way.m
gradient_ENO_3d_splitted.m
Ground_Truth_Analysis.m
Ground_Truth_Analysis_Callback.m
half_sample_image.m
hand_pointer.mat
hand_pointer_r.mat
hand_pointer_s.mat
Histogram_Equalization_Callback.m
hs_velocity_avg3d.m
hs_velocity_avg3d_weighted.m
hu_lung_seg.m
im2_gradient_v2.m
ImageAlignmentUI.fig
ImageAlignmentUI.m
InitSliderPosition.m
InitUserData.m
InputImageVoxelSizeRatio.m
Input_Image_Padding_Value.m
intensity_correction.m
Intensity_Correction_Callback.m
interpn_splitted.m
interpn_splitted2.m
InvertDVF.m
iteration_parameters.fig
ITK_methods.m
Jacobian_Analysis_Callback.m
levelset_motion_0.m
levelset_motion_free_deform.m
levelset_motion_free_deform_wo_gui.m
levelset_motion_global_affine.m
levelset_motion_global_affine_wo_gui.m
levelset_motion_local_affine.m
levelset_motion_local_affine_wo_gui.m
levelset_motion_wo_gui.m
limits2array.m
ListStructureNames.m
Load1CERRImage.m
LoadCERRPlanC.m
LoadLibMeshContour.m
LoadMATFromfile.m
LoadStructuresDICOMViaCERR.m
Load_1_Image_DICOM_Folder.m
Load_1_MATLAB_Image.m
Load_2_Images.m
Load_Dose_CERR.m
Load_Dose_DICOMRT.m
Load_Images_From_Temp_Folder.m
Load_structures_from_CERR_plan.m
Logging.m
makeColumnVector.m
makeRowVector.m
MakeSagittalVol_pred_mich.m
MakeStructureMask.m
make_checkerboard.m
Mark_MVCT_FOV_As_NaN_Callback.m
move3dimage.m
move3dimage2.m
move3dimage3.m
MoveDisplay.m
multigrid_7.m
multigrid_7_reverse_consistent.m
Multigrid_Downsample.m
Multigrid_Downsample_All.m
Multigrid_Downsample_Structure_Masks.m
multigrid_nogui6.m
multigrid_rc_nogui.m
multigrid_regional_smoothing.m
myclahe.m
mysize.m
normalized2pixel.m
NormalizeData.m
optical_flow_affine.m
optical_flow_global_methods.m
optical_flow_global_methods_integer.m
optical_flow_global_methods_memory_saving.m
optical_flow_global_methods_piecewise_smoothing.m
optical_flow_inverse_consistency_methods.m
optical_flow_lkt_0.m
optical_flow_lkt_6.m
Pad_Both_Images.m
Pad_Image_Callback.m
Pad_Smaller_Image_Callback.m
Paint_Image_Callback.m
Patch_Images_Using_Structures_Masks_Callback.m
Patch_Images_with_ART_Structure.m
pixel2normalized.m
PrefixStructureNames.m
Preprocessing_Images.m
Preprocessing_Images_2.m
print_lasterror.m
print_stack.m
ProcessCERRStructures.m
ProcessStructureImgAssociation.m
process_structure_masks.m
ProjectStructure.m
rasterToMaskWithoutPlanC.m
Read_Preprocessing_selection.m
RebuiltStructure.m
recalculate_mvs.m
recalculate_mvs_as_2D_slices.m
recalculate_mvs_as_2D_slices_interpne.m
reconfigure_sliders.m
RecoverImageAlignmentPoints.m
RefreshDisplay.m
reg3dgui.fig
reg3dgui.m
RegMethod_Menu_Map.m
reg_method_dispatch.m
reg_method_dispatch_inverse_consistency.m
RemoveUndoInfo.m
rename_struct_field.m
Resample_Images_After_Loading.m
resample_structure_masks.m
ResliceStructures.m
reslice_contour_points.m
Reverse_Consistency_Analysis_Callback.m
rmfield_from_struct.m
SaveDoseDICOMRT.m
SaveMAT2file.m
SaveMAT2file2.m
Save_Images_To_Temp_Folder.m
segment_air.m
seg_lung.m
SelectColormap.m
SelectScanFromPlanC.m
SetActivePanel.m
setbigtext.m
setinfotext.m
setpath.m
SetRegAlgorithmSelection.m
SetSliders.m
SetSlidersValueForOtherDisplays.m
SetWaitbarMsg.m
set_display_geometry_limits.m
show_values.m
Similarity_Measurement_Callback.m
SkipDisplayUpdate.m
SmoothStructure.m
SmoothStructureByMeshIteratively.m
SmoothStructureMorphological.m
Smooth_Deformed_Contours_Callback.m
Smooth_Motion_Field_Callback.m
smooth_neighborhoold.m
smooth_neighborhoold3.m
smooth_neighborhoold9.m
SortTwoValues.m
start_registration_from_menu.m
StructureColorListUI.fig
StructureColorListUI.m
StructureManager.fig
StructureManager.m
subtract_image_local_average.m
Translate1CoordinateValue.m
TranslateCoordinates.m
translate_image.m
translation_only_align_CT.m
Update_CERR_Dose_Struct.m
update_display.m
Update_Geometry_Limit_Menus.m
User_Input_Offsets.m
Use_Default_Window_Level.m
Using_Masks_To_Replace_Images_Callback.m
vector_laplacian.m
WhichDoseToDisplay.m
WhichImageCoordinateToUse.m
WhichImageDimension.m
which_DVF_to_process.m
ZoomDisplay.m
zoom_pointer.mat
support_programs
basic_image_processing
cerr_addons
edge_perserving_filters
MATLAB levelset toolbox
matlab _extensions