资 源 简 介
SSuMMo
SSuMMo is software for assigning taxonomic information to DNA sequences, and comparatively visualising any number of results in the same cladogram (tree).
Programs included with the source code include:-
* dictify.py - Build a hierarchical database of hidden Markov Models;
* SSUMMO.py - allocate sequences to recognised taxonomic names;
* rankAbundance.py - analyse biological diversity, using Simpson, Shannon & other methods;
* comparative\_results.py - visualise results as cladograms with a distinct ability to easily cross-compare datasets;
* dict\_to\_phyloxml.py - convert results to phyloxml format;
* dict\_to\_html.py - build html representation;
* rarefactionCurve.py - plot rarefaction curves and calculate corresponding biodiversity indices
Python source code is provided here, on google code.
The prebuilt
