regender

REGENDER: REsident GENome DEtectoR This is the companion web site of the REGENDER tool. Follow the links below to download the high-resolution versions of the plots referred in the paper. The Saccaromices Cerevisiae dataset (Liti et al., 2009) can be downloaded from here. Since REGENDER take as input plain text files, the download files must be converted into plain text sequences to be used (read readme.txt in the REGENDER zip file for more info). The strains Y55 and YPS128, are already included in the REGENDER zip file.

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Requirements Java(>=6) + Fastutil 5.1.5 Python (>=1.6) + Matplotlib Bash (the Windows users are recommended to download Cygwin) (The J

readme.txt
a.jar
input_files2
annotations
ref
y55
yps128
lib
out
py
align.py
align.pyc
blast.py
blast.pyc
create_plot.py
example.py
fasta.py
fasta.pyc
intervals2fasta.py
intervals2fasta.pyc
main.py
main2.py
matplotutils.py
matplotutils.pyc
myshell.py
myshell.pyc
plot2.py
regender.py
seqs.py
seqs.pyc
stats01.py
stats01.pyc
statsUtils.py
statsUtils.pyc
validate_out.py
walk.py