ng-strider

NG-STRider A tool to infer Simple Tandem Repeat (STR) alleles from high throughput genomic sequencing data. Requires Python 2.5+ and a Linux operating system. Using Pysam (SAMTools API for Python), NG-STRIder takes a BAM file as input and returns inferred alleles for the 13 CODIS STR loci. Probe regions for analysis are customizable -- see the documentation for details. Questions and comments are always welcome! Documentation is available in the archived package, or through the wiki. Resources Pysam SAMtools STRBase UCSC Genome Browser Downloads