seq-align-fpga

We develop HDL code for FPGA translated from the C/C++ code of various genome sequence alignment algorithms. Optimising and hardware-software co-design of the alignment algorithms is done to obtain speed-up.

BWT_FPGA_0.3
isim.tmp_save
snapshots
templates
tmp
_xmsgs
__ISE_repository_parallel_sorting.ise_.lock
tristatebuffer_vhdl.prj
tristatebuffer.vhd
tmpRTVStore.xwv
testbench_bencher.prj
testbench.xwv_bak
testbench.xwv
testbench.vhw
testbench.tbw
testbench.jhd
testbench.ant
splitter_vhdl.prj
splitter8_vhdl.prj
splitter8.vhd
splitter8.sym
splitter8.spl
splitter.vhd
splitter.sym
splitter.spl
sorting_block_test_bencher.prj
sorting_block_test.xwv_bak
sorting_block_test.xwv
sorting_block_test.tbw
sorting_block_test.jhd
sorting_block_test.ant
sorting_block_summary.xml
sorting_block_summary.html
sorting_block_prev_built.ngd
sorting_block_out_combiner_summary.html
sorting_block_out_combiner.vhd
sorting_block_map.map
sorting_block_guide.ncd
sorting_block.symlog
sorting_block.symbak
sorting_block.sym
sorting_block.schcmd
sorting_block.schbak
sorting_block.sch
sorting_block.jhd
sorting_block.cmd_log
RAM_xmdf.tcl
RAM_summary.html
RAM_flist.txt
RAM.xco
RAM.vho
RAM.vhd
RAM.sym
RAM.spl
RAM.ngc.bak
RAM.ngc
RAM.mif
pepExtractor.prj
parallel_sorting.snp_ISE_Backup
parallel_sorting.snp
parallel_sorting.ntrc_log
parallel_sorting.ise_ISE_Backup
parallel_sorting.ise
parallal_sort_summary.xml
parallal_sort_summary.html
parallal_sort_prev_built.ngd
parallal_sort_pad.txt
parallal_sort_pad.csv
parallal_sort_map.map
parallal_sort_guide.ncd
parallal_sort.xpi
parallal_sort.ut
parallal_sort.unroutes
parallal_sort.twx
parallal_sort.twr
parallal_sort.schlog
parallal_sort.schcmd
parallal_sort.schbak
parallal_sort.sch
parallal_sort.par
parallal_sort.pad
parallal_sort.ncd
parallal_sort.drc
parallal_sort.bit
parallal_sort.bgn
multiplexer_vhdl.prj
multiplexer_summary.html
multiplexer.vhd
multiplexer.symlog
multiplexer.sym
multiplexer.spl
isim.log
COUNT31_vhdl.prj
control_summary.xml
control_summary.html
control_prev_built.ngd
control_map.map
control_guide.ncd
control.vhd
comparator_vhdl.prj
comparator_summary.html
comparator.vhd
comparator.symlog
comparator.sym
comparator.spl
comparator.schlog
comparator.sch
combiner_vhdl.prj
combiner_16_vhdl.prj
combiner_16_summary.html
combiner_16.vhd
combiner_16.sym
combiner_16.spl
combiner.vhd
combiner.sym
combiner.spl
architecture.vhd
.lso