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scrap-plusplus

  • 资源大小:1,004.63 kB
  • 上传时间:2021-06-30
  • 下载次数:0次
  • 浏览次数:1次
  • 资源积分:1积分
  • 标      签: Academic Bioinformatics Biology

资 源 简 介

A C++ implementation that utilizes Profile HMMs to identify and trim adapter sequences from raw cDNA data Note that this is just a beta version. This software only works on Linux and requires g++ 4.6 to run To install the software, first unzip the file gunzip SCRAP.tar.gztar -xf SCRAP.tar And run make on the contents inside To get your first test run working, run the following command ./SCRAP -i test.fa -a adapter.fa -o test.out

文 件 列 表

SCRAP_v8
adapter.fa
test.cpp
sort
Algorithm.cpp
buildHMM.cpp
SmithWaterman.h
Makefile
SCRAP.cpp~
SCRAP.cpp
training
SCRAP
matrix.hh
Sorter.h
test.out
Alignment.h
Algorithm.h
Makefile~
buildHMM.h
Algorithm.cpp~
SmithWaterman.o
SmithWaterman.cpp
test.fa
Algorithm.o
Sorter.cpp
test
buildHMM.o
Sorter.o
SCRAP.h
SCRAP.o

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