放置核小体使用改进的高斯混合模型的工具

NOrMAL is a command line tool for accurate placing of the nucleosomes. It was designed to resolve overlapping nucleosomes and extract extra information ("fuzziness", probability, etc.) of nucleosome placement. To achieve this goal the tool clusters the input tags according to Nucleosome Model (see the paper for detailed description) using EM learning process. The tool is written in C++. There are no special requirements except for g++ compiler and nix environment to compile and use the tool. It was checked to compile using g++ compiler under Ubuntu 11.04 and Mac OS X 10.6 The software is freely available for academic use. The software is still in development and may contain bugs and not 100% bulletproof.

config.txt
DATA
.DS_Store
Chr_01
main.cc
Makefile
NOrMAL
NOrMAL.cc
NOrMAL.h
README.txt
test_config.txt