rap-green

RAP-Green is a new implementation and an improvment of the RAP software (http://pbil.univ-lyon1.fr/software/RAP/RAP.htm), which permits to compare gene and species trees, infers duplication events, and provide confidence score in function conservation between genes. Afterwards, it became a development plateform, to implement several phylogenetic tree analysis softwares. RAP-Green includes also two graphical web interfaces : one to display phylogenetic trees, explore them and annotate them ; and another to explore a tree forest, using tree pattern matching, and a tree pattern daemon implemented in the Rap-Green java package. PLEASE CITE: http://bioinformatics.oxfordjournals.org/content/21/11/2596.short CONTACT For general questions or comments, you can contact the project owner (jeanfrancois.dufayard at gmail.com) ABOUT TREE PATTERN MATCHING