mu2a

Introduction MU2A is a variant annotation tool that reconciles the genome and transcriptome to determine the effects of base substitutions. MU2A rapidly and accurately determines the effects of genomic variants on transcripts and proteins; determines the genomic context of variants detected in transcripts; flags variants that correspond to known SNPs and known cancer mutations; annotates variants with information on genomic conservation, GO annotation, and determines effect on domain integrity. You are welcome to use MU2A at http://krauthammerlab.med.yale.edu/mu2a; alternatively, you can deploy MU2A locally. MU2A is an open-source, java web application. For a high-level overview of MU2A, refer to the Bioinformatics paper.

bin
.project
unix
win
build
.project
build.xml
mu2a
.settings
.classpath
.project
build.xml
src
test
testconfig
admin.sql
mu2a.sql
mu2a_alignment.sql
mu2a_gene_region.hg18.sql
mu2a_gene_region.hg19.sql
mu2a_gene_region.sql
mu2a_gene_region_index.sql
mu2a_refgene.hg18.sql
mu2a_refgene.hg19.sql
mu2a_refgene.sql
mu2a_refgene_exon.sql
mu2a_security.sql
mu2a_snp.hg18.sql
mu2a_snp.hg19.sql
mu2a_snp.sql
stats.sql
mu2aWebApp
.settings
.classpath
.project
WebContent
build.xml
src
data
.settings
1000genomes
build.xml
cancerGeneCensus
classification
cosmic
dbSNP
hapmap
melanomaGenome
mu2a
ncbi
panther
paper
reactome
scorematrices
ucsc
uniprot