psrnac

PSRNAC is a Python release of algorithms in the paper "Fast Phased Small RNA Cycle Counting Algorithms," IEEE BIBE 2010. Later we use our paper or the paper to refer to it. One algorithm in the paper above is used in this PLoS One paper: http://www.plosone.org/article/info:doi/10.1371/journal.pone.0004971 The release contains five files MPSRC.py (function library for solving MPSRC counting) WPSRC.py (function library for solving WPSRC counting) Mtest.py (example code demonstrating how to call functions defined in MPSRC.py) Wtest.py (example code demonstrating how to call functions defined in WPSRC.py) test.dat (a piece of sample data which also shows the expected input format, if you wanna use our code directly) For either MPSRC or WPSRC, we provide three functions, basic(), bucket() and quadratic(), referring to basic,